Overview | plotB | plotCA | plotCL | plotIndex | plotLA | plotN | plotSel
Package: scape 2.3.5
scape: Statistical Catch-at-Age Plotting Environment
Import, plot, and diagnose results from statistical catch-at-age models, used in fisheries stock assessment.
Authors:
scape_2.3.5.tar.gz
scape_2.3.5.zip(r-4.7-any)scape_2.3.5.zip(r-4.6-any)scape_2.3.5.zip(r-4.5-any)
scape_2.3.5.tgz(r-4.6-any)scape_2.3.5.tgz(r-4.5-any)
scape_2.3.5.tar.gz(r-4.7-any)scape_2.3.5.tar.gz(r-4.6-any)
scape_2.3.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
scape/json (API)
| # Install 'scape' in R: |
| install.packages('scape', repos = c('https://arni-magnusson.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/arni-magnusson/scape/issues
Datasets:
Last updated from:7bedfbf905. Checks:7 WARNING, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | WARNING | 157 | ||
| source / vignettes | OK | 209 | ||
| linux-release-x86_64 | WARNING | 155 | ||
| macos-release-arm64 | WARNING | 104 | ||
| macos-oldrel-arm64 | WARNING | 91 | ||
| windows-devel | WARNING | 103 | ||
| windows-release | WARNING | 101 | ||
| windows-oldrel | WARNING | 98 | ||
| wasm-release | OK | 123 |
Exports:estNestN.intestSigmaIestSigmaRgetNgetSigmaIgetSigmaRimportADCAMimportColimportMCMCimportProjiterateplotBplotCAplotCLplotIndexplotLAplotNplotSel
Dependencies:backportsbase64encbslibcachemcheckmatecliclustercodacolorspacecpp11data.tabledigestevaluatefarverfastmapfontawesomeforeignFormulafsggplot2gluegridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetsisobandjquerylibjsonliteknitrlabelinglatticelifecyclemagrittrmemoisemimennetR6rappdirsRColorBrewerrlangrmarkdownrpartrstudioapiS7sassscalesstringistringrtinytexvctrsviridisLitewithrxfunyaml
Gallery
Last update: 2020-11-23
Started: 2017-06-17
Importing results
Last update: 2020-11-23
Started: 2017-06-17
R goes fishing
Last update: 2017-06-17
Started: 2017-06-17
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Statistical Catch-at-Age Plotting Environment | scape-package scape |
| Estimate Effective Sample Size | estN estN.int |
| Estimate Abundance Index Sigma | estSigmaI |
| Estimate Recruitment Sigma | estSigmaR |
| Extract Sample Size | getN |
| Extract Abundance Index Sigma | getSigmaI |
| Extract Recruitment sigma | getSigmaR |
| Import ADCAM Model Results | importADCAM |
| Import Coleraine Model Results | importCol |
| Import Coleraine MCMC Results | importMCMC |
| Import Coleraine MCMC Projections | importProj |
| Get Candidate Sigmas and Sample Sizes | iterate |
| Plot Biomass, Recruitment, and Landings | plotB |
| Plot Catch at Age | plotCA |
| Plot Catch at Length | plotCL |
| Plot Abundance Index | plotIndex |
| Plot Length at Age | plotLA |
| Plot Numbers at Age | plotN |
| Plot Selectivity and Maturity | plotSel |
| Cod Assessment | x.cod |
| Ling Assessment | x.ling |
| Oreo Assessment | x.oreo |
| Saithe Assessment | x.saithe |
| Whiting Assessment | x.sbw |
| MCMC Results from Cod Assessment | xmcmc |
| MCMC Projections from Cod Assessment | xproj |
