Package: scape 2.3.5

scape: Statistical Catch-at-Age Plotting Environment

Import, plot, and diagnose results from statistical catch-at-age models, used in fisheries stock assessment.

Authors:Arni Magnusson [aut, cre]

scape_2.3.5.tar.gz
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scape_2.3.5.tgz(r-4.5-any)scape_2.3.5.tgz(r-4.4-any)scape_2.3.5.tgz(r-4.3-any)
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scape_2.3.5.tgz(r-4.4-emscripten)scape_2.3.5.tgz(r-4.3-emscripten)
scape.pdf |scape.html✨
scape/json (API)
NEWS

# Install 'scape' in R:

install.packages('scape', repos = c('https://arni-magnusson.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/arni-magnusson/scape/issues

Datasets:

x.cod - Cod Assessment
x.ling - Ling Assessment
x.oreo - Oreo Assessment
x.saithe - Saithe Assessment
x.sbw - Whiting Assessment
xmcmc - MCMC Results from Cod Assessment
xproj - MCMC Projections from Cod Assessment

On CRAN:

5.72 score 35 scripts 495 downloads 15 mentions 19 exports 66 dependencies

Last updated 4 months agofrom:7bedfbf905. Checks:1 OK, 7 WARNING. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Feb 19 2025
R-4.5-win	WARNING	Feb 19 2025
R-4.5-mac	WARNING	Feb 19 2025
R-4.5-linux	WARNING	Feb 19 2025
R-4.4-win	WARNING	Feb 19 2025
R-4.4-mac	WARNING	Feb 19 2025
R-4.3-win	WARNING	Feb 19 2025
R-4.3-mac	WARNING	Feb 19 2025

Exports:estN estN.int estSigmaI estSigmaR getN getSigmaI getSigmaR importADCAM importCol importMCMC importProj iterate plotB plotCA plotCL plotIndex plotLA plotN plotSel

Dependencies:backports base64enc bslib cachem checkmate cli cluster coda colorspace data.table digest evaluate fansi farver fastmap fontawesome foreign Formula fs ggplot2 glue gridExtra gtable highr Hmisc htmlTable htmltools htmlwidgets isoband jquerylib jsonlite knitr labeling lattice lifecycle magrittr MASS Matrix memoise mgcv mime munsell nlme nnet pillar pkgconfig R6 rappdirs RColorBrewer rlang rmarkdown rpart rstudioapi sass scales stringi stringr tibble tinytex utf8 vctrs viridis viridisLite withr xfun yaml

Gallery

Rendered fromgallery.Rnwusingutils::Sweaveon Feb 19 2025.

Last update: 2020-11-23
Started: 2017-06-17

Importing results

Rendered frommymodel.Rnwusingutils::Sweaveon Feb 19 2025.

Last update: 2020-11-23
Started: 2017-06-17

R goes fishing

Rendered fromdsc-vignette.Rnwusingutils::Sweaveon Feb 19 2025.

Last update: 2017-06-17
Started: 2017-06-17

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Statistical Catch-at-Age Plotting Environment	scape-package scape
Estimate Effective Sample Size	estN estN.int
Estimate Abundance Index Sigma	estSigmaI
Estimate Recruitment Sigma	estSigmaR
Extract Sample Size	getN
Extract Abundance Index Sigma	getSigmaI
Extract Recruitment sigma	getSigmaR
Import ADCAM Model Results	importADCAM
Import Coleraine Model Results	importCol
Import Coleraine MCMC Results	importMCMC
Import Coleraine MCMC Projections	importProj
Get Candidate Sigmas and Sample Sizes	iterate
Plot Biomass, Recruitment, and Landings	plotB
Plot Catch at Age	plotCA
Plot Catch at Length	plotCL
Plot Abundance Index	plotIndex
Plot Length at Age	plotLA
Plot Numbers at Age	plotN
Plot Selectivity and Maturity	plotSel
Cod Assessment	x.cod
Ling Assessment	x.ling
Oreo Assessment	x.oreo
Saithe Assessment	x.saithe
Whiting Assessment	x.sbw
MCMC Results from Cod Assessment	xmcmc
MCMC Projections from Cod Assessment	xproj

Usage by other packages (reverse dependencies)