gdata - Various R Programming Tools for Data Manipulation

Various R programming tools for data manipulation, including medical unit conversions, combining objects, character vector operations, factor manipulation, obtaining information about R objects, generating fixed-width format files, extracting components of date & time objects, operations on columns of data frames, matrix operations, operations on vectors, operations on data frames, value of last evaluated expression, and a resample() wrapper for sample() that ensures consistent behavior for both scalar and vector arguments.

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13.43 score 9 stars 121 dependents 6.1k scripts 45k downloads

TAF - Transparent Assessment Framework for Reproducible Research

General framework to organize data, methods, and results used in reproducible scientific analyses. A TAF analysis consists of four scripts (data.R, model.R, output.R, report.R) that are run sequentially. Each script starts by reading files from a previous step and ends with writing out files for the next step. Convenience functions are provided to version control the required data and software, run analyses, clean residues from previous runs, manage files, manipulate tables, and produce figures. With a focus on stability and reproducible analyses, the TAF package comes with no dependencies. TAF forms a base layer for the 'icesTAF' package and other scientific applications.

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7.13 score 3 stars 2 dependents 416 scripts 445 downloads

scape - Statistical Catch-at-Age Plotting Environment

Import, plot, and diagnose results from statistical catch-at-age models, used in fisheries stock assessment.

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5.77 score 39 scripts 288 downloads

MSSQL - Tools to Work with Microsoft SQL Server Databases via 'RODBC'

Tools that extend the functionality of the 'RODBC' package to work with Microsoft SQL Server databases. Makes it easier to browse the database and examine individual tables and views.

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5.00 score 2 stars 2 scripts 231 downloads

gmt - Interface Between GMT Map-Making Software and R

Interface between the 'GMT' map-making software and R, enabling the user to manipulate geographic data within R and call GMT commands to draw and annotate maps in postscript format. The gmt package is about interactive data analysis, rapidly visualizing subsets and summaries of geographic data, while performing statistical analysis in the R console.

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4.90 score 1 stars 1 dependents 53 scripts 854 downloads

condor - Interact with 'Condor' from R via SSH

Interact with 'Condor' from R via SSH connection. Files are first uploaded from user machine to submitter machine, and the job is then submitted from the submitter machine to 'Condor'. Functions are provided to submit, list, and download 'Condor' jobs from R. 'Condor' is an open source high-throughput computing software framework for distributed parallelization of computationally intensive tasks.

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htcondorofpsamtool

4.45 score 6 stars 31 scripts 283 downloads

makeit - Run R Scripts if Needed

Automation tool to run R scripts if needed, based on last modified time. It comes with no package dependencies, organizational overhead, or structural requirements. In short: run an R script if underlying files have changed, otherwise do nothing.

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4.40 score 5 stars 9 scripts 247 downloads

plotMCMC - MCMC Diagnostic Plots

Markov chain Monte Carlo diagnostic plots. The purpose of the package is to combine existing tools from the 'coda' and 'lattice' packages, and make it easy to adjust graphical details.

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4.26 score 1 stars 36 scripts 380 downloads

fishgrowth - Fit Growth Curves to Fish Data

Fit growth models to otoliths and/or tagging data, using the 'RTMB' package and maximum likelihood. The otoliths (or similar measurements of age) provide direct observed coordinates of age and length. The tagging data provide information about the observed length at release and length at recapture at a later time, where the age at release is unknown and estimated as a vector of parameters. The growth models provided by this package can be fitted to otoliths only, tagging data only, or a combination of the two. Growth variability can be modelled as constant or increasing with length.

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4.14 score 3 stars 23 scripts 190 downloads

fishstat - Global Fishery and Aquaculture Statistics

The Food and Agriculture Organization of the United Nations (FAO) FishStat database is the leading source of global fishery and aquaculture statistics and provides unique information for sector analysis and monitoring. This package provides the global production data from all fisheries and aquaculture in R format, ready for analysis.

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4.02 score 3 stars 4 scripts 578 downloads

areaplot - Plot Stacked Areas and Confidence Bands as Filled Polygons

Plot stacked areas and confidence bands as filled polygons, or add polygons to existing plots. A variety of input formats are supported, including vectors, matrices, data frames, formulas, etc.

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3.64 score 88 scripts 422 downloads

r2d2 - Bivariate (Two-Dimensional) Confidence Region and Frequency Distribution

Generic functions to analyze the distribution of two continuous variables: 'conf2d' to calculate a smooth empirical confidence region, and 'freq2d' to calculate a frequency distribution.

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3.47 score 7 scripts 6.0k downloads