Changes in version 2.3.5 (2024-10-22) - Maintenance release. Changes in version 2.3.3 (2020-11-23) - Maintenance release. Changes in version 2.3-1 (2017-06-20) - Added function importADCAM() to import results from ADCAM-type models. - Added example object x.saithe. - Hardwired stringsAsFactors=FALSE in importCol() and removed '...' argument. - User can pass a data frame as the main argument to functions, instead of a scape object. Changes in version 2.2-0 (2014-03-12) - Package loads quietly, thanks to explicit namespace handling. - Added functions importMCMC() and importProj() to import MCMC results from Coleraine. These functions were a part of the "scapeMCMC" package, which has now been renamed to "plotMCMC" and no longer contains Coleraine-specific functions. - Removed argument 'info' from importCol(). - Improved plotCA() and plotCL() handling of NA data values. Changes in version 2.1-0 (2013-04-09) - Added argument 'swap' to plotCA(), plotCL(), and plotN(). - Added argument 'strip' to plotCA(), plotCL(), plotIndex(), plotLA(), plotN(), and plotSel(). - Added type "l"[ast year] to plotN(). - Improved type "r"[ecruitment] plotN(), so age at recruitment is no longer hardwired as 1. Changes in version 2.0-1 (2010-09-14) - Improved package help page. Changes in version 2.0-0 (2010-09-13) - Added suite of functions to diagnose sigmas and sample sizes: estN(), estN.int(), estSigmaI(), estSigmaR(), getN(), getSigmaI(), getSigmaR(), and iterate(). - Fixed missing error bars in plotIndex, by reestablishing Hmisc dependency. Changes in version 1.1-5 (2010-09-05) - Improved handling of character/factor/integer in plotting functions. - Improved importCol() so that Year column is integer, not double. Changes in version 1.1-4 (2010-09-02) - Minor improvements in help pages. Changes in version 1.1-2 (2010-09-01) - Added argument '...' to importCol(), e.g. to pass stringsAsFactors=FALSE. - Example objects x.cod, x.ling, x.oreo, and x.sbw have character instead of factor columns. Changes in version 1.1-0 (2010-08-31) - Changed default value of 'what' in plotIndex() to "s" (survey biomass index). - Added argument 'col.strip' to plotCA(), plotCL(), plotIndex(), plotLA(), plotN(), and plotSel(), with gray as default. - Reduced clutter during startup, by importing Hmisc and suggesting gdata. - Added three vignettes: dsc-vignette.pdf, gallery.pdf, and mymodel.pdf. Changes in version 1.0-8 (2007-09-30) - Added argument 'col.points' to plotN(). Changes in version 1.0-7 (2005-10-25) - Fixed plotIndex() so it returns trellis object or data frame, as documented. Changes in version 1.0-6 (2005-10-19) - Improved help pages. Changes in version 1.0-5 - Added help page for scape-package. - Renamed importRes() to importCol(). - Renamed plot*() arguments: 'log.transform'->'log', 'base.log'->'base', and 'plot.it'->'plot'. - Improved plotIndex() and plotLA() so default y-axis limits extend 4% beyond data extremes, except lower limit is zero when values are not log-transformed. Changes in version 1.0-4 (2005-09-04) - Fixed documentation for plotN() argument 'axes'. Changes in version 1.0-3 (2005-09-01) - Fixed importRes() example. Changes in version 1.0-2 (2005-08-30) - Fixed discrepancy between default argument values in functions and help pages. Changes in version 1.0-1 - Removed redundant argument 'fitted.also' from plotIndex(). User can pass lty.lines=0 to suppress fitted lines. - Renamed argument 'fitted.also' to 'fit' in plotCA() and plotCL(). Changes in version 1.0-0 - Standardized and vectorized graphical arguments further. - Submitted to CRAN. Changes in version 0.2-2 - Added help pages for all functions. - Improved importRes() so both survey and commercial selectivity are imported. - Renamed Survey and Gear columns to Series, in scape elements CAc, CAs, CLc, CLs, and Sel. - Changed plotCA() and plotCL() so they assume what="s" was intended if what="c" failed. - Added argument 'together' to plotSel() to plot gears in one panel. - Standardized graphical arguments further between plot functions. Changes in version 0.2-1 - Added argument 'cex.legend' to plotB() to set legend text size. - Added argument 'ratio.bars' to plotN() to set bar width in barplots. - Improved tutorial by adding DSC proceedings paper. Changes in version 0.2-0 - Added function plotB() to plot biomass trajectories, landings, and stock recruitment. - Changed plotCA(), plotCL(), and plotIndex() so first series is plotted by default. - Added argument 'together' to plotLA() to plot both sexes in one panel. - Changed importRes() so imported Coleraine models have attributes call=[call] and scape.version=[version]. The info attribute is now empty quotes. - Changed importRes() to CPUE data are imported without a Gear column. Series name can contain the gear name if the user wishes. - Renamed scape element B column Years to Year. - Changed graphical arguments in all plot functions, to simplify and standardize. - Updated x.ling and ling.res to a newer version of Coleraine. Changes in version 0.1-7 - Added function plotIndex(), making plotCPUE() and plotSurvey() obsolete. - Improved importRes() to support gear-specific vulnerable biomass, and label annual Dev elements with years instead of cohorts. - Improved x.ling so it does not contain CLs element, since survey catch-at-length data were not used in that assessment. Changes in version 0.1-6 - Renamed plotSelMat() to plotSel(), and added support for gear-specific plots. - Renamed scape element SelMat to Sel, with a new Gear column. - Improved importRes() so CPUE element will not contain empty Gear:Series combinations. - Added example object x.ling and example Coleraine file ling.res. Changes in version 0.1-5 - Updated tutorial. - Improved plotCPUE() and plotSurvey() multipanel layout control, using 'as.table' instead of 'rev.series'. - Improved plotCPUE() and plotSurvey() grid lines at low values. Changes in version 0.1-4 - Renamed argument 'div' to 'q' in plotCPUE() and plotSurvey() to clarify its purpose. - Improved plotCPUE() and plotSurvey() so internal arguments 'yobs' and 'yfit' do not cause a conflict with top-level argument abbreviation 'fit'. - Changed plotSelMat() so default cex.points=1. - Improved importRes() so needless warnings are suppressed. - Improved plotCPUE() and plotSurvey() so strip labels are more informative. - Added argument 'fitted.also' to plotCPUE(), plotLA(), and plotSurvey(). - Improved importRes() so it looks for correctly spelled Number_of_survey_C@A flag. - Improved x.cod so it contains CAs element. - Updated tutorial. - Improved importRes() so maturity is calculated without NaN values. Changes in version 0.1-3 - Updated tutorial. Changes in version 0.1-2 - Added tutorial. - Added example Coleraine files cod.res, l_at_age.txt, oreo.res, oreo.txt, and sbw.res. - Improved plotN() to draw smarter y axis. - Changed importRes() so imported Coleraine models have attributes class="scape" and info=[path]. - Removed functions importCor(), plotB(), and plotPearsonCLc(). Changes in version 0.1-1 - Added example objects x.cod, x.oreo, and x.sbw. Changes in version 0.1-0 - Added functions importCor(), importRes(), plotB(), plotCA(), plotCL(), plotCPUE(), plotLA(), plotN(), plotPearsonCLc(), plotSelMat(), and plotSurvey().